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WormBase - http://www.wormbase.org/
Data bases on the genetics of C elegans and related nematodes. |
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Gene Expression Omnibus - http://www.ncbi.nlm.nih.gov/geo/
Database of gene expression data from NCBI (National Center for Biotechnical Information). Includes a definable search by different characteristics. |
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Kyoto Encyclopedia of Genes and Genomes (KEGG) - http://www.genome.ad.jp/kegg/
Graphical and hypertext-based information on biochemical pathways, including metabolic and regulatory pathways cell cycle and growth factor signaling. From Kanehisa Laboratories in the Bioinformatics Center of Kyoto University, Japan. |
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ArrayExpress - http://www.ebi.ac.uk/arrayexpress
Database of gene expression and other microarray data at the European Bioinformatics Institute (EBI), located at the Wellcome Trust Foundation in Cambridge, UK. |
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Allen Brain Atlas - http://www.brain-map.org
Database of gene expression patterns in the mouse brain. |
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Ribosomal Database Project - http://rdp.cme.msu.edu/
From Center for Microbial Ecology, Michigan State University, USA |
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Stanford Microarray Database - http://genome-www5.stanford.edu/
Data from microarray experiments, and the corresponding image files. From Stanford University, USA. |
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RNase P Database - http://www.mbio.ncsu.edu/RNaseP/
A compilation of RNase P sequences, sequence alignments, secondary structures, three-dimensional structures, and accessory information. |
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Gene Expression in Tooth - http://bite-it.helsinki.fi/
Database on the expression of different genes in the developing tooth. |
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The Database of Rice Transcription Factors (DRTF) - http://drtf.cbi.pku.edu.cn
Free of charge database of transcription factors of rice. From CBI, Peking University, China. |
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GenePaint - http://www.genepaint.org
Database of gene expression patterns in the mouse embryo. From Max-Planck-Institute for Biophysical Chemistry, Dept. Genes and Behavior, Göttingen, Germany |
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Gemma - http://broca.ubic.ca/Gemma/
Database and software system for the meta-analysis of gene expression data. |
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SymAtlas - http://symatlas.gnf.org
Database on gene function and structure, from the Genomics Institute of the Novartis Research Foundation. |
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Novartis Gene Expression Atlas - http://expression.gnf.org
Database on gene expression in men and mice. |
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Mirage - http://www.ifti.org/
Information methodologies, tools, and technologies relating to the study of gene expression and signal transduction. From the Institute for Transcriptional Informatics (IFTI), USA. |
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Exploring the Metabolic and Generic Control of Gene Expression - http://cmgm.stanford.edu/pbrown/explore/
Database with the data for the experiments in the paper - DeRisi et. al. Science 278: 680-686. Includes text files that can be downloaded. The original paper requires a subscription fee. |
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Genevestigator - http://www.genevestigator.ethz.ch
Multi-organism microarray database and expression meta-analysis tool. |
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MERNA - http://merna.lbl.gov/
A data base of metal binding sites of RNA, from the Holbrooke Laboratory, Lawrence Berkeley National Laboratory, Berkeley, California, USA. |
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GeneExpress - http://wwwmgs.bionet.nsc.ru/mgs/systems/geneexpress/
Designed for analysis of genomic regulatory sequences of higher eukaryotes. Includes several databases and programs for visualization of the information contained. From the Laboratory of Theoretical Genetics of the Institute of Cytology and Genetics of Siberian Branch of Russian Academy of Science in Novosibirsk (Russia). |
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Rice Transcription Factor Database - http://ricetfdb.bio.uni-potsdam.de/
RiceTFDB is a public database of rice genes involved in transcriptional control. From the University of Potsdam, Berlin, Germany. |