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Web Pages
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  Patuxent Software Archive http://www.mbr-pwrc.usgs.gov/software.html
Site contains software for ecological management, including tagging game and ecosystem analysis.
  Wildlife Ecology Software http://nhsbig.inhs.uiuc.edu/
A clearing-house for wildlife ecology related software, for applications such as habitat analysis, diversity indices, simulations, general population dynamics, capture/recapture, survival, energetics, statistics, home range, and telemetry.
  http://pbil.univ-lyon1.fr/ADE-4/ http://pbil.univ-lyon1.fr/ADE-4/
Exploratory and Euclidean methods in Environmental sciences.
  Populus - Simulations of Population Biology http://www.cbs.umn.edu/populus
Software containing set of simulations used to teach population biology and evolutionary ecology at the University of Minnesota. Freely downloadable for educational use.
  Program Distance http://www.ruwpa.st-and.ac.uk/distance/
Distance is a software program designed for the analysis of distance sampling data, to estimate density and abundance of a population.
  WWW-Server for Ecological Modelling http://dino.wiz.uni-kassel.de/ecobas.html
Information about ecological modelling (simulation models, descriptions of these models, simulation-software, data sources and other information about modelling). Many ecological models available for downloading; researchers are invited to upload their models here to make them available to others.
  CyberTracker http://www.cybertracker.org/
Free software for data collection and analysis in ecological and environmental field work.
  RAMAS Ecological and Environmental Software http://www.ramas.com
Offers software for ecology, conservation biology, wildlife management, and human health risk analysis. Data analysis for endangered and threatened species, models of extinction risk assessment linked to geographic information systems.
  http://www.swarm.org/index.php/Swarm_main_page http://www.swarm.org/index.php/Swarm_main_page
The Swarm Simulation System, created by The Sante Fe Institute, can be used both as a simulation tool for artificial life and ecological models and ecosystems.
  Across Trophic Level System Simulation http://atlss.org/
A simulation system for the Everglades and Big Cypress Swamp (USA).
  WorldMap http://www.nhm.ac.uk/science/projects/worldmap/worldmap/demo2.htm
Software for exploring geographical patterns in diversity, rarity and conservation priorities from large biological datasets.
  Blossom Statistical Software http://www.fort.usgs.gov/Products/Software/blossom/
Interactive program for making statistical comparisons with distance-function based permutation tests and for testing parameters estimated in linear models with permutation procedures.
  MjM Software Design http://home.centurytel.net/~mjm/
PC-ORD software for multivariate statistical analysis of ecological communities, including cluster analysis, ordination, and species diversity.
  Pisces Conservation Ltd http://www.pisces-conservation.com/
Information about ecological software and consultancy services.
  Habitat Evaluation Procedures http://www.fort.usgs.gov/Products/Software/HEP/
HEP enables land use managers to quantify the effects of alternative management plans over time, and provide for mitigation and compensation that can allow fair use of the land and maintain healthy habitats for affected species.
  LemnaTec Image Processing http://www.lemnatec.de
Bio-testing for potentially hazardous substances using image processing of cultured Lemna.
  Wa-Tor for Windows http://www.kovcomp.co.uk/wator/
Site offers a population ecology simulation game pitting sharks against fish. The populations may fluctuate or may go extinct, depending on the initial parameters and subsequent random events.
  Population Ecology http://www.ento.vt.edu/~sharov/
Online quantitative population ecology lectures and population model and data information.
  National Hydrologic Assessment Tool http://www.fort.usgs.gov/Products/Software/NATHAT/
NATHAT allows use of daily and peak streamflow data to establish a hydrologic baseline, environmental flow standards and evaluate past and proposed hydrologic modifications.
  The Hydroecological Integrity Assessment Process http://www.fort.usgs.gov/Resources/Research_Briefs/HIP.asp
USGS scientists have developed HIP and a suite of software tools for conducting a hydrologic classification of streams, addressing instream flow needs, and assessing past and proposed hydrologic alterations on streamflow and other ecosystem components.
  Wildlife Counts http://www.wildlifecounts.com/
Software to help estimate populations of birds and fish in an ecosystem.
  ECOSIM : Ecosystem Simulation http://www.isima.fr/ecosim/
Information and links concerning ecological modeling and application of simulation to ecology.
  Computer Software for Teaching Ecology http://nsm1.nsm.iup.edu/rgendron/software.shtml
Free educational software for college-level ecology courses plus links to many additional software sites.
  Ecological Software Solutions http://www.ecostats.com
Software for biology, ecology, geography, wildlife fisheries and the environmental sciences.
  Didg Information Systems http://didg.com
Mobile, desktop and internet information systems for recording, identifying and brokering plant and animal observations.
  KrebsWin http://www.biology.ualberta.ca/jbrzusto/krebswin.html
Programs from Ecological Methodology by Charles J. Krebs, compiled to run under Windows 3.x and Windows 9x.
  GRASP - Generalized Regression Analysis and Spatial Prediction http://www.unine.ch/CSCF/grasp/
Downloadable S-Plus plugin to automate spatial predictions using regression analysis.
  MAGIS: Landscape Planning Software http://www.fs.fed.us/rm/econ/magis/
Application developed by the US Forest Service to support vegetation management planning. The MAGIS system allows users to analyze competing management issues such as fire hazard reduction, ecological restoration, wildlife habitat and economics.
  http://www.fort.usgs.gov/Products/Software/SALMOD/ http://www.fort.usgs.gov/Products/Software/SALMOD/
Provides a computer model that computer model that simulates the dynamics of freshwater salmonid populations, both anadromous and resident.
  http://www.fort.usgs.gov/Products/Software/PHABSIM/ http://www.fort.usgs.gov/Products/Software/PHABSIM/
Set of programs to predict the micro-habitat conditions in rivers as a function of streamflow, and the relative suitability of those conditions to aquatic life.
  Moist-Soil Management Advisor http://www.fort.usgs.gov/Products/Software/MSMA/
MSMA assists wetland managers in the development of annual management plans for a moist-soil complex composed of several individual units.
  MultiTrace http://www.jensen-software.com/
Jensen Software Systems offer software programs to analyze telemetry data including dive analysis, temperature analysis, deadreckoning, geolocation and pH analysis.
  http://www.forestry.ubc.ca/simfor/ http://www.forestry.ubc.ca/simfor/
A decision support tool designed to help managers and researchers evaluate the impacts of forest harvesting scenarios against landscape and habitat indicators.
  Ecotools http://www.offis.de/projekte/projekt_e.php?id=140
Information about tools to support the modelling and simulation of individual-oriented ecological models.
  http://www.msu.edu/~kirschte/biovol http://www.msu.edu/~kirschte/biovol
Program for calculating the volumes, surface areas, and surface to volume ratios of diatoms.
  Diversidad http://home.att.net/~podolsky/divcov.htm
Scans digital earth images and automatically identifies areas with both high and low biodiversity.
  Oakleaf Systems http://www.oakleafsystems.net/
Simulations of data based upon relationships presented in the journal Ecology, with 25 different simulations for each journal volume.
  Pollen-based Climate Reconstruction http://dendro.naruto-u.ac.jp/~nakagawa/
Windows software that provides quantitative climate reconstruction from pollen spectral datasets.
  Fossil Creek Software http://p2.fossilcreeksoft.com/
Describes and offers POP-II and POP-III population dynamics software, which is used by government and university wildlife biologists to simulate the dynamics of deer, elk, moose and other large animal populations.
  http://www.cbc.yale.edu/old/cce/gecko.html http://www.cbc.yale.edu/old/cce/gecko.html
Yale software; downloadable demo available for this software. Designed to teach ecosystem dynamics to advanced ecology students.
  KiteGraph http://home.swipnet.se/kitegraph/
KiteGraph illustrates growth patterns of animal populations in kite diagrams.
  Environmental Design Making http://commtechlab.msu.edu/sites/dlc-me/resources/rs_5.html
Microbial Ecology Resources' software designed for students. Allows students to create ecosystems to gain understandings of ecosystem functionality and productivity.
  http://commtechlab.msu.edu/sites/dlc-me/resources/rs_4.html http://commtechlab.msu.edu/sites/dlc-me/resources/rs_4.html
Microbial Ecology Resources' software; this particular item will run simulations of multiple species in a specific environment. Most variables can be manipulated.
  Ecomaster and Cascoly Critters http://cascoly.com/science.htm
Software: Ecology and biology simulations for all ages

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