Google Directory - Science > Biology > Biochemistry and Molecular Biology > Gene Expression

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Science > Biology > Biochemistry and Molecular Biology > Gene Expression > Databases

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Genomics (19)
Proteomics (9)

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Allen Brain Atlas - http://www.brain-map.org
Database of gene expression patterns in the mouse brain.

ArrayExpress - http://www.ebi.ac.uk/arrayexpress
Database of gene expression and other microarray data at the European Bioinformatics Institute (EBI), located at the Wellcome Trust Foundation in Cambridge, UK.

Exploring the Metabolic and Generic Control of Gene Expression - http://cmgm.stanford.edu/pbrown/explore/
Database with the data for the experiments in the paper - DeRisi et. al. Science 278: 680-686. Includes text files that can be downloaded. The original paper requires a subscription fee.

Gene Expression in Tooth - http://bite-it.helsinki.fi/
Database on the expression of different genes in the developing tooth.

Gene Expression Machine Learning Repository - http://gemler.fzv.uni-mb.si
A collection of gene expression datasets that can be used for benchmarking gene expression oriented machine learning algorithms.

Gene Expression Omnibus - http://www.ncbi.nlm.nih.gov/geo/
Database of gene expression data from NCBI (National Center for Biotechnical Information). Includes a definable search by different characteristics.

GeneExpress - http://wwwmgs.bionet.nsc.ru/mgs/systems/geneexpress/
Designed for analysis of genomic regulatory sequences of higher eukaryotes. Includes several databases and programs for visualization of the information contained. From the Laboratory of Theoretical Genetics of the Institute of Cytology and Genetics of Siberian Branch of Russian Academy of Science in Novosibirsk (Russia).

GenePaint - http://www.genepaint.org
Database of gene expression patterns in the mouse embryo. From Max-Planck-Institute for Biophysical Chemistry, Dept. Genes and Behavior, Göttingen, Germany

Genevestigator - http://www.genevestigator.ethz.ch
Multi-organism microarray database and expression meta-analysis tool.

Genomics Portals - http://www.GenomicsPortals.org
Integrative platform for analyzing a large collection of genome-scale datasets (more than 400 million data points).

http://merna.lbl.gov/ - http://merna.lbl.gov/
A data base of metal binding sites of RNA, from the Holbrooke Laboratory, Lawrence Berkeley National Laboratory, Berkeley, California, USA.

http://pgrc.ipk-gatersleben.de/batex/ - http://pgrc.ipk-gatersleben.de/batex/
Data base for gene expression data from plants.

http://www.ifti.org/ - http://www.ifti.org/
Information methodologies, tools, and technologies relating to the study of gene expression and signal transduction. From the Institute for Transcriptional Informatics (IFTI), USA.

IRES Database - http://ifr31w3.toulouse.inserm.fr/iresdatabase
Database on gene expression with information on Internal Ribosome Entry Sites IRES. From INSERM, the French Institute of Health.

IRESite: The Database of Experimentally Verified IRES Structures - http://www.iresite.org
This database contains information about the experimentally studied IRES (Internal Ribosome Entry Site) segments.

Kyoto Encyclopedia of Genes and Genomes (KEGG) - http://www.genome.ad.jp/kegg/
Graphical and hypertext-based information on biochemical pathways, including metabolic and regulatory pathways cell cycle and growth factor signaling. From Kanehisa Laboratories in the Bioinformatics Center of Kyoto University, Japan.

Novartis Gene Expression Atlas - http://biogps.gnf.org
Database on gene expression in men and mice.

Oncomine - http://www.oncomine.org
Compendium of cancer transcriptome profiles with analysis engine.

Ribosomal Database Project - http://rdp.cme.msu.edu/
From Center for Microbial Ecology, Michigan State University, USA

Rice Transcription Factor Database - http://ricetfdb.bio.uni-potsdam.de/
RiceTFDB is a public database of rice genes involved in transcriptional control. From the University of Potsdam, Berlin, Germany.

RNase P Database - http://www.mbio.ncsu.edu/RNaseP/
A compilation of RNase P sequences, sequence alignments, secondary structures, three-dimensional structures, and accessory information.

Stanford Microarray Database - http://genome-www5.stanford.edu/
Data from microarray experiments, and the corresponding image files. From Stanford University, USA.

StemBase - http://www.stembase.ca
StemBase is a database containing gene expression data from human and mouse stem cells and their derivatives.

SymAtlas - http://symatlas.gnf.org
Database on gene function and structure, from the Genomics Institute of the Novartis Research Foundation.

The Database of Rice Transcription Factors (DRTF) - http://drtf.cbi.pku.edu.cn
Free of charge database of transcription factors of rice. From CBI, Peking University, China.

WormBase - http://www.wormbase.org/
Data bases on the genetics of C elegans and related nematodes.

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