WO1999001571A3 - Compositions and methods for detecting vancomycin resistant enterococci by cycling probe reactions - Google Patents
Compositions and methods for detecting vancomycin resistant enterococci by cycling probe reactions Download PDFInfo
- Publication number
- WO1999001571A3 WO1999001571A3 PCT/CA1998/000632 CA9800632W WO9901571A3 WO 1999001571 A3 WO1999001571 A3 WO 1999001571A3 CA 9800632 W CA9800632 W CA 9800632W WO 9901571 A3 WO9901571 A3 WO 9901571A3
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- probe
- target
- nucleic acid
- resistant gene
- complex
- Prior art date
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6816—Hybridisation assays characterised by the detection means
- C12Q1/6823—Release of bound markers
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/689—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/16—Primer sets for multiplex assays
Abstract
Priority Applications (4)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
JP50600899A JP2002507129A (en) | 1997-07-03 | 1998-07-03 | Compositions and methods for detecting vancomycin-resistant enterococci by cycling probe reaction |
EP98933389A EP0996743A2 (en) | 1997-07-03 | 1998-07-03 | Compositions and methods for detecting vancomycin resistant enterococci by cycling probe reactions |
AU83273/98A AU8327398A (en) | 1997-07-03 | 1998-07-03 | Compositions and methods for detecting vancomycin resistant enterococci by cycling probe reactions |
CA002294565A CA2294565A1 (en) | 1997-07-03 | 1998-07-03 | Compositions and methods for detecting vancomycin resistant enterococci by cycling probe reactions |
Applications Claiming Priority (6)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US5169997P | 1997-07-03 | 1997-07-03 | |
US60/051,699 | 1997-07-03 | ||
US8602298P | 1998-05-18 | 1998-05-18 | |
US60/086,022 | 1998-05-18 | ||
US9027598P | 1998-06-22 | 1998-06-22 | |
US60/090,275 | 1998-06-22 |
Publications (2)
Publication Number | Publication Date |
---|---|
WO1999001571A2 WO1999001571A2 (en) | 1999-01-14 |
WO1999001571A3 true WO1999001571A3 (en) | 1999-03-25 |
Family
ID=27368004
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
PCT/CA1998/000632 WO1999001571A2 (en) | 1997-07-03 | 1998-07-03 | Compositions and methods for detecting vancomycin resistant enterococci by cycling probe reactions |
Country Status (6)
Country | Link |
---|---|
US (1) | US6274316B1 (en) |
EP (1) | EP0996743A2 (en) |
JP (1) | JP2002507129A (en) |
AU (1) | AU8327398A (en) |
CA (1) | CA2294565A1 (en) |
WO (1) | WO1999001571A2 (en) |
Families Citing this family (17)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP1210365A2 (en) * | 1999-08-17 | 2002-06-05 | Beth Israel Deaconess Medical Center, Inc. | Methods and compositions for restoring antibiotic susceptibility in glycopeptide-resistant enterococcus |
GB0118758D0 (en) * | 2001-08-01 | 2001-09-26 | Sybesma Wilbert F H | Chimeric primed based real time rt-pcr for qualification of rna or dna templates in a crude sample |
AU2003208959A1 (en) * | 2002-01-30 | 2003-09-02 | Id Biomedical Corporation | Methods for detecting vancomycin-resistant microorganisms and compositions therefor |
US7252940B2 (en) * | 2002-08-21 | 2007-08-07 | Epoch Biosciences, Inc. | Abasic site endonuclease assay |
EP1668158B1 (en) * | 2003-08-11 | 2010-10-20 | Georgia State University Research Foundation, Inc. | Rna detection and quantitation |
US8546082B2 (en) * | 2003-09-11 | 2013-10-01 | Ibis Biosciences, Inc. | Methods for identification of sepsis-causing bacteria |
US8097416B2 (en) | 2003-09-11 | 2012-01-17 | Ibis Biosciences, Inc. | Methods for identification of sepsis-causing bacteria |
US7956175B2 (en) | 2003-09-11 | 2011-06-07 | Ibis Biosciences, Inc. | Compositions for use in identification of bacteria |
US20050058985A1 (en) * | 2003-09-12 | 2005-03-17 | Dodgson Kirsty Jane | Method and kit for identifying vancomycin-resistant enterococcus |
US7811753B2 (en) | 2004-07-14 | 2010-10-12 | Ibis Biosciences, Inc. | Methods for repairing degraded DNA |
CN102007222A (en) * | 2007-08-13 | 2011-04-06 | 3M创新有限公司 | Methods for detecting drug-resistant microbes |
US20110190170A1 (en) * | 2008-10-03 | 2011-08-04 | Ibis Biosciences, Inc. | Compositions for use in identification of antibiotic-resistant bacteria |
US20110200995A1 (en) * | 2009-09-04 | 2011-08-18 | Intelligent Medical Devices, Inc. | Optimized probes and primers and methods of using same for the detection, screening, isolation and sequencing of vancomycin resistance genes and vancomycin resistant enterococci |
EP3967771B1 (en) * | 2014-08-11 | 2023-10-04 | Luminex Corporation | Probes for improved melt discrimination and multiplexing in nucleic acid assays |
US10227661B2 (en) * | 2014-11-21 | 2019-03-12 | GeneWeave Biosciences, Inc. | Sequence-specific detection and phenotype determination |
CN106884038A (en) * | 2015-12-16 | 2017-06-23 | 北京大学人民医院 | A kind of gene chip kit for detecting gram-positive bacterium drug resistant gene |
WO2019165469A1 (en) * | 2018-02-26 | 2019-08-29 | Cy Molecular Diagnostics, Inc | Composition and methods for affinity directed enrichment of rare species |
Citations (6)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP0227976A2 (en) * | 1985-12-05 | 1987-07-08 | Meiogenics, Inc. | Molecules useful for detecting nucleic acid sequences |
FR2699537A1 (en) * | 1992-12-18 | 1994-06-24 | Pasteur Institut | A protein conferring inducible resistance to glycopeptides, especially in gram-positive bacteria. Nucleotide sequences encoding this protein. |
WO1995000667A1 (en) * | 1993-06-17 | 1995-01-05 | The Research Foundation Of State University Of New York | Improved methods for detecting nucleic acid sequences |
US5403711A (en) * | 1987-11-30 | 1995-04-04 | University Of Iowa Research Foundation | Nucleic acid hybridization and amplification method for detection of specific sequences in which a complementary labeled nucleic acid probe is cleaved |
WO1995014106A2 (en) * | 1993-11-17 | 1995-05-26 | Id Biomedical Corporation | Cycling probe cleavage detection of nucleic acid sequences |
WO1996008582A2 (en) * | 1994-09-12 | 1996-03-21 | Bergeron Michel G | Specific and universal probes and amplification primers to rapidly detect and identify common bacterial pathogens and antibiotic resistance genes from clinical specimens for routine diagnosis in microbiology laboratories |
Family Cites Families (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
AU606043B2 (en) | 1985-03-28 | 1991-01-31 | F. Hoffmann-La Roche Ag | Detection of viruses by amplification and hybridization |
US5011769A (en) * | 1985-12-05 | 1991-04-30 | Meiogenics U.S. Limited Partnership | Methods for detecting nucleic acid sequences |
AU7487294A (en) | 1993-08-18 | 1995-03-14 | Id Biomedical Corporation | Compositions and methods for detecting target nucleic acid sequences utilizing flanking sequence enzyme molecules |
-
1998
- 1998-07-02 US US09/110,048 patent/US6274316B1/en not_active Expired - Lifetime
- 1998-07-03 EP EP98933389A patent/EP0996743A2/en not_active Withdrawn
- 1998-07-03 WO PCT/CA1998/000632 patent/WO1999001571A2/en not_active Application Discontinuation
- 1998-07-03 CA CA002294565A patent/CA2294565A1/en not_active Abandoned
- 1998-07-03 AU AU83273/98A patent/AU8327398A/en not_active Abandoned
- 1998-07-03 JP JP50600899A patent/JP2002507129A/en active Pending
Patent Citations (6)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP0227976A2 (en) * | 1985-12-05 | 1987-07-08 | Meiogenics, Inc. | Molecules useful for detecting nucleic acid sequences |
US5403711A (en) * | 1987-11-30 | 1995-04-04 | University Of Iowa Research Foundation | Nucleic acid hybridization and amplification method for detection of specific sequences in which a complementary labeled nucleic acid probe is cleaved |
FR2699537A1 (en) * | 1992-12-18 | 1994-06-24 | Pasteur Institut | A protein conferring inducible resistance to glycopeptides, especially in gram-positive bacteria. Nucleotide sequences encoding this protein. |
WO1995000667A1 (en) * | 1993-06-17 | 1995-01-05 | The Research Foundation Of State University Of New York | Improved methods for detecting nucleic acid sequences |
WO1995014106A2 (en) * | 1993-11-17 | 1995-05-26 | Id Biomedical Corporation | Cycling probe cleavage detection of nucleic acid sequences |
WO1996008582A2 (en) * | 1994-09-12 | 1996-03-21 | Bergeron Michel G | Specific and universal probes and amplification primers to rapidly detect and identify common bacterial pathogens and antibiotic resistance genes from clinical specimens for routine diagnosis in microbiology laboratories |
Non-Patent Citations (3)
Title |
---|
ARTHUR M. ET AL.,: "The vanZ gene of Tn1546 from Enterococcus faecium BM4147 confers resistance to teicoplanin", GENE, vol. 154, - 1995, pages 87 - 92, XP002088482 * |
Beggs M. et al., Characterization of mycobacterium tuberculosis complex direct repeat sequence for use in cycling probe reaction Journal of clinical microbiology, 12-1996, Vol34, No. 12, 2985-2989 * |
Patel R. et al., Multiplex PCR detection of vanA,vanB,vanC-1, and vanC-2/3 genes in enterococci; J. Clin. Microbiol., 3-1997, Vol.53,No.3,703-707 * |
Also Published As
Publication number | Publication date |
---|---|
JP2002507129A (en) | 2002-03-05 |
WO1999001571A2 (en) | 1999-01-14 |
EP0996743A2 (en) | 2000-05-03 |
AU8327398A (en) | 1999-01-25 |
CA2294565A1 (en) | 1999-01-14 |
US6274316B1 (en) | 2001-08-14 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
WO1999001572A3 (en) | Methods for rapidly detecting methicillin resistant staphylococci | |
WO1999001571A3 (en) | Compositions and methods for detecting vancomycin resistant enterococci by cycling probe reactions | |
US5093245A (en) | Labeling by simultaneous ligation and restriction | |
US6235476B1 (en) | Process for detecting nucleic acids by mass determination | |
FI111739B (en) | Elimination of erroneous negative results in the detection of nucleic acid | |
EP1680517B1 (en) | Concatameric ligation products: compositions, methods and kits for same | |
KR930700680A (en) | Nucleic Acid Amplification Using DNA-Dependent RNA Polymerase Activity of RNA Replicase | |
CA2377567A1 (en) | High throughput assay system | |
KR870007427A (en) | How to detect viruses by amplification and hybridization | |
NZ547495A (en) | Multiplexed nucleic acid analysis by fragmentation of double-stranded DNA | |
WO1996041001A1 (en) | Method for analyzing a nucleotide sequence and kit therefore | |
US20050214809A1 (en) | Real-time detection of nucleic acids and proteins | |
CA2522418A1 (en) | Method for characterising polynucleotides | |
EP0530998B1 (en) | Detection of complementary nucleotide sequences | |
AU2098999A (en) | Solid-phase tips and uses relating thereto | |
WO1999001569A3 (en) | Additives for use in cycling probe reactions | |
KR960007791A (en) | Methods of preparing nucleic acid amplification reaction products that cannot be targeted for further amplification, diagnostic assays using the methods, kits and containers suitable for carrying out the methods or assays | |
EP1375673A4 (en) | Gene analysis method and analyzer therefor | |
CN113692447A (en) | System for controlling a power supply | |
EP0915172A3 (en) | Assay for chlamydia trachomatis by amplification and detection of chlamydia trachomatis nucleic acid | |
US20210363517A1 (en) | High throughput amplification and detection of short rna fragments | |
RU2265058C2 (en) | Method for detection of nucleic acid-target in sample | |
CA2058232A1 (en) | Process to prevent contamination by amplified nucleic acid sequence | |
US20180073063A1 (en) | Reusable microarray compositions and methods | |
US20200399678A1 (en) | Method for analyzing dna methylation using next generation sequencer and method for concentrating specific dna fragments |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
AK | Designated states |
Kind code of ref document: A2 Designated state(s): AL AM AT AU AZ BA BB BG BR BY CA CH CN CU CZ DE DK EE ES FI GB GE GH GM GW HU ID IL IS JP KE KG KP KR KZ LC LK LR LS LT LU LV MD MG MK MN MW MX NO NZ PL PT RO RU SD SE SG SI SK SL TJ TM TR TT UA UG US UZ VN YU ZW |
|
AL | Designated countries for regional patents |
Kind code of ref document: A2 Designated state(s): GH GM KE LS MW SD SZ UG ZW AM AZ BY KG KZ MD RU TJ TM AT BE CH CY DE DK ES FI FR GB GR IE IT LU MC NL PT SE BF BJ CF CG CI CM GA GN ML MR NE SN TD TG |
|
AK | Designated states |
Kind code of ref document: A3 Designated state(s): AL AM AT AU AZ BA BB BG BR BY CA CH CN CU CZ DE DK EE ES FI GB GE GH GM GW HU ID IL IS JP KE KG KP KR KZ LC LK LR LS LT LU LV MD MG MK MN MW MX NO NZ PL PT RO RU SD SE SG SI SK SL TJ TM TR TT UA UG US UZ VN YU ZW |
|
AL | Designated countries for regional patents |
Kind code of ref document: A3 Designated state(s): GH GM KE LS MW SD SZ UG ZW AM AZ BY KG KZ MD RU TJ TM AT BE CH CY DE DK ES FI FR GB GR IE IT LU MC NL PT SE BF BJ CF CG CI CM GA GN ML MR NE SN TD TG |
|
DFPE | Request for preliminary examination filed prior to expiration of 19th month from priority date (pct application filed before 20040101) | ||
121 | Ep: the epo has been informed by wipo that ep was designated in this application | ||
ENP | Entry into the national phase |
Ref document number: 2294565 Country of ref document: CA Kind code of ref document: A Country of ref document: CA |
|
WWE | Wipo information: entry into national phase |
Ref document number: 83273/98 Country of ref document: AU |
|
NENP | Non-entry into the national phase |
Ref country code: KR |
|
WWE | Wipo information: entry into national phase |
Ref document number: PA/a/2000/000200 Country of ref document: MX |
|
WWE | Wipo information: entry into national phase |
Ref document number: 1998933389 Country of ref document: EP |
|
WWP | Wipo information: published in national office |
Ref document number: 1998933389 Country of ref document: EP |
|
REG | Reference to national code |
Ref country code: DE Ref legal event code: 8642 |
|
WWW | Wipo information: withdrawn in national office |
Ref document number: 1998933389 Country of ref document: EP |