WO2007134208A3 - Compositions and methods to detect enterococci nucleic acid - Google Patents

Compositions and methods to detect enterococci nucleic acid Download PDF

Info

Publication number
WO2007134208A3
WO2007134208A3 PCT/US2007/068735 US2007068735W WO2007134208A3 WO 2007134208 A3 WO2007134208 A3 WO 2007134208A3 US 2007068735 W US2007068735 W US 2007068735W WO 2007134208 A3 WO2007134208 A3 WO 2007134208A3
Authority
WO
WIPO (PCT)
Prior art keywords
nucleic acid
methods
compositions
detection
detect
Prior art date
Application number
PCT/US2007/068735
Other languages
French (fr)
Other versions
WO2007134208A2 (en
Inventor
Reinhold B Pollner
Kristin W Livezey
Original Assignee
Gen Probe Inc
Reinhold B Pollner
Kristin W Livezey
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Gen Probe Inc, Reinhold B Pollner, Kristin W Livezey filed Critical Gen Probe Inc
Priority to AU2007249286A priority Critical patent/AU2007249286B2/en
Priority to EP07783627A priority patent/EP2021513B1/en
Priority to JP2009511178A priority patent/JP5154548B2/en
Priority to CA002651946A priority patent/CA2651946A1/en
Priority to AT07783627T priority patent/ATE514794T1/en
Publication of WO2007134208A2 publication Critical patent/WO2007134208A2/en
Publication of WO2007134208A3 publication Critical patent/WO2007134208A3/en

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • C12Q1/689Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for bacteria

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

The disclosed invention includes nucleic acid oligomers that may be used as amplification oligomers, including primers, capture probes for sample preparation, and detection probes for detection of indicator enterococci 23S rRNA sequences in samples by using methods of specific nucleic acid amplification and detection.
PCT/US2007/068735 2006-05-12 2007-05-11 Compositions and methods to detect enterococci nucleic acid WO2007134208A2 (en)

Priority Applications (5)

Application Number Priority Date Filing Date Title
AU2007249286A AU2007249286B2 (en) 2006-05-12 2007-05-11 Compositions and methods to detect enterococci nucleic acid
EP07783627A EP2021513B1 (en) 2006-05-12 2007-05-11 Compositions and methods to detect enterococci nucleic acid
JP2009511178A JP5154548B2 (en) 2006-05-12 2007-05-11 Compositions and methods for detecting enterococcal nucleic acids
CA002651946A CA2651946A1 (en) 2006-05-12 2007-05-11 Compositions and methods to detect enterococci nucleic acid
AT07783627T ATE514794T1 (en) 2006-05-12 2007-05-11 COMPOSITIONS AND METHODS FOR THE DETECTION OF ENTEROCOCCAL NUCLEIC ACIDS

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US80011606P 2006-05-12 2006-05-12
US60/800,116 2006-05-12

Publications (2)

Publication Number Publication Date
WO2007134208A2 WO2007134208A2 (en) 2007-11-22
WO2007134208A3 true WO2007134208A3 (en) 2008-01-31

Family

ID=38658499

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2007/068735 WO2007134208A2 (en) 2006-05-12 2007-05-11 Compositions and methods to detect enterococci nucleic acid

Country Status (7)

Country Link
US (1) US7588897B2 (en)
EP (1) EP2021513B1 (en)
JP (1) JP5154548B2 (en)
AT (1) ATE514794T1 (en)
AU (1) AU2007249286B2 (en)
CA (1) CA2651946A1 (en)
WO (1) WO2007134208A2 (en)

Families Citing this family (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2012529908A (en) * 2009-06-15 2012-11-29 ネットバイオ・インコーポレーテッド Improved method for quantification of forensic DNA
US20130040859A1 (en) * 2011-08-08 2013-02-14 Gen-Probe Incorporated Spectrally-resolved chemiluminescent probes for sensitive multiplex molecular quantification
US10675657B2 (en) * 2018-07-10 2020-06-09 Visera Technologies Company Limited Optical elements and method for fabricating the same
CN113136444B (en) * 2021-05-10 2024-04-19 临沂大学 Microdroplet digital PCR detection method for enterococcus faecalis in medical food

Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2000066789A2 (en) * 1999-05-03 2000-11-09 Gen-Probe Incorporated Polynucleotide matrix-based method of identifying microorganisms
US6583275B1 (en) * 1997-07-02 2003-06-24 Genome Therapeutics Corporation Nucleic acid sequences and expression system relating to Enterococcus faecium for diagnostics and therapeutics
WO2005017202A2 (en) * 2003-05-13 2005-02-24 Gen-Probe Incorporated Method and kit for identifying antibiotic-resistant microorganisms
WO2006025672A1 (en) * 2004-08-28 2006-03-09 Genein Co., Ltd. Oligonucleotide for detection of microorganism diagnostic kits and methods for detection of microorganis using the oligonucleotide

Family Cites Families (48)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
FR2422956A1 (en) * 1978-04-13 1979-11-09 Pasteur Institut METHOD OF DETECTION AND CHARACTERIZATION OF A NUCLEIC ACID OR OF A SEQUENCE OF THE SAME, AND ENZYMATIC REAGENT FOR THE IMPLEMENTATION OF THIS PROCESS
US4786600A (en) * 1984-05-25 1988-11-22 The Trustees Of Columbia University In The City Of New York Autocatalytic replication of recombinant RNA
US4683202A (en) 1985-03-28 1987-07-28 Cetus Corporation Process for amplifying nucleic acid sequences
US4683195A (en) * 1986-01-30 1987-07-28 Cetus Corporation Process for amplifying, detecting, and/or-cloning nucleic acid sequences
US4868105A (en) * 1985-12-11 1989-09-19 Chiron Corporation Solution phase nucleic acid sandwich assay
US4800159A (en) * 1986-02-07 1989-01-24 Cetus Corporation Process for amplifying, detecting, and/or cloning nucleic acid sequences
JP2641880B2 (en) 1986-08-11 1997-08-20 シスカ・ダイアグノスティックス・インコーポレーテッド Nucleic acid probe assays and compositions
US5541308A (en) * 1986-11-24 1996-07-30 Gen-Probe Incorporated Nucleic acid probes for detection and/or quantitation of non-viral organisms
IL86724A (en) 1987-06-19 1995-01-24 Siska Diagnostics Inc Method and kits for the amplification and detection of nucleic acid sequences
CA1340843C (en) * 1987-07-31 1999-12-07 J. Lawrence Burg Selective amplification of target polynucleotide sequences
US5639604A (en) * 1987-09-21 1997-06-17 Gen-Probe Incorporated Homogeneous protection assay
US5283174A (en) * 1987-09-21 1994-02-01 Gen-Probe, Incorporated Homogenous protection assay
US5585481A (en) * 1987-09-21 1996-12-17 Gen-Probe Incorporated Linking reagents for nucleotide probes
US5124246A (en) * 1987-10-15 1992-06-23 Chiron Corporation Nucleic acid multimers and amplified nucleic acid hybridization assays using same
US5130238A (en) * 1988-06-24 1992-07-14 Cangene Corporation Enhanced nucleic acid amplification process
US5118801A (en) * 1988-09-30 1992-06-02 The Public Health Research Institute Nucleic acid process containing improved molecular switch
US5656207A (en) * 1989-06-24 1997-08-12 Gen Probe Incorporated Detecting or quantifying multiple analytes using labelling techniques
CA2020958C (en) * 1989-07-11 2005-01-11 Daniel L. Kacian Nucleic acid sequence amplification methods
US5516663A (en) * 1990-01-26 1996-05-14 Abbott Laboratories Ligase chain reaction with endonuclease IV correction and contamination control
US5427930A (en) * 1990-01-26 1995-06-27 Abbott Laboratories Amplification of target nucleic acids using gap filling ligase chain reaction
US5378825A (en) * 1990-07-27 1995-01-03 Isis Pharmaceuticals, Inc. Backbone modified oligonucleotide analogs
US5849481A (en) * 1990-07-27 1998-12-15 Chiron Corporation Nucleic acid hybridization assays employing large comb-type branched polynucleotides
US5521300A (en) * 1991-08-13 1996-05-28 Norval B. Galloway Oligonucleotides complementary to mycobacterial nucleic acids
ATE515510T1 (en) 1991-12-24 2011-07-15 Isis Pharmaceuticals Inc OLIGONUCLEOTIDES MODIFIED BY DNA SECTIONS
US5424413A (en) * 1992-01-22 1995-06-13 Gen-Probe Incorporated Branched nucleic acid probes
CA2135073C (en) * 1992-05-06 2002-11-19 Daniel L. Kacian Nucleic acid sequence amplification method, composition and kit
US5422252A (en) * 1993-06-04 1995-06-06 Becton, Dickinson And Company Simultaneous amplification of multiple targets
KR100189229B1 (en) 1993-07-23 1999-06-01 다니엘 엘. 캐시앙, 헨리 엘. 노르호프 Methods for enhancing nucleic acid amplification
US5925517A (en) * 1993-11-12 1999-07-20 The Public Health Research Institute Of The City Of New York, Inc. Detectably labeled dual conformation oligonucleotide probes, assays and kits
US5547861A (en) * 1994-04-18 1996-08-20 Becton, Dickinson And Company Detection of nucleic acid amplification
US5648211A (en) * 1994-04-18 1997-07-15 Becton, Dickinson And Company Strand displacement amplification using thermophilic enzymes
EP0709466B1 (en) * 1994-10-28 2006-09-27 Gen-Probe Incorporated Compositions and methods for the simultaneous detection and quantification of multiple specific nucleic acid sequences
US6737248B2 (en) * 1996-01-05 2004-05-18 Human Genome Sciences, Inc. Staphylococcus aureus polynucleotides and sequences
US6593114B1 (en) * 1996-01-05 2003-07-15 Human Genome Sciences, Inc. Staphylococcus aureus polynucleotides and sequences
EP0892808B1 (en) * 1996-04-12 2008-05-14 PHRI Properties, Inc. Detection probes, kits and assays
US6534273B2 (en) * 1997-05-02 2003-03-18 Gen-Probe Incorporated Two-step hybridization and capture of a polynucleotide
WO1998050583A1 (en) * 1997-05-02 1998-11-12 Gen-Probe Incorporated Two-step hybridization and capture of a polynucleotide
US6180340B1 (en) * 1997-10-31 2001-01-30 Gen-Probe Incorporated Extended dynamic range assays
US5958695A (en) * 1998-01-15 1999-09-28 The Board Of Trustees Of The University Of Illinois Method of screening to find new antibiotics
US6949367B1 (en) * 1998-04-03 2005-09-27 Epoch Pharmaceuticals, Inc. Modified oligonucleotides for mismatch discrimination
DE69941333D1 (en) * 1998-07-02 2009-10-08 Gen Probe Inc MOLECULAR TORCHES
AU5267800A (en) * 1999-05-03 2000-11-17 Gen-Probe Incorporated Polynucleotide probes for detection and quantitation of bacteria in the family enterobacteriaceae
AU1940001A (en) 1999-11-30 2001-06-12 Curagen Corporation Nucleic acids containing single nucleotide polymorphisms and methods of use thereof
SG165981A1 (en) 2000-10-27 2010-11-29 Chiron Srl Nucleic acids and proteins from streptococcus groups a & b
AU2003288018A1 (en) 2002-11-20 2004-06-15 Pharmacia Italia S.P.A. Method for the detection of microorganisms in pharmaceutical products
DE602005020943D1 (en) * 2004-07-01 2010-06-10 Gen Probe Inc METHOD AND COMPOSITIONS FOR DETECTING NUCLEIC ACIDS IN A BIOLOGICAL SAMPLE
AU2005280162B2 (en) * 2004-08-27 2012-04-26 Gen-Probe Incorporated Single-primer nucleic acid amplification methods
EP1853732A2 (en) * 2005-02-28 2007-11-14 Gen-Probe Incorporated Compositions and methods of detecting an analyte by using a nucleic acid hybridization switch probe

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6583275B1 (en) * 1997-07-02 2003-06-24 Genome Therapeutics Corporation Nucleic acid sequences and expression system relating to Enterococcus faecium for diagnostics and therapeutics
WO2000066789A2 (en) * 1999-05-03 2000-11-09 Gen-Probe Incorporated Polynucleotide matrix-based method of identifying microorganisms
WO2005017202A2 (en) * 2003-05-13 2005-02-24 Gen-Probe Incorporated Method and kit for identifying antibiotic-resistant microorganisms
WO2006025672A1 (en) * 2004-08-28 2006-03-09 Genein Co., Ltd. Oligonucleotide for detection of microorganism diagnostic kits and methods for detection of microorganis using the oligonucleotide

Non-Patent Citations (4)

* Cited by examiner, † Cited by third party
Title
DATABASE EMBL [online] 9 August 2006 (2006-08-09), "Enterococcus dispar clone EPH4_3 genomic sequence.", XP002458726, retrieved from EBI accession no. EMBL:DQ839472 Database accession no. DQ839472 *
FRAHM EDITH ET AL: "Application of the fluorogenic probe technique (TaqMan PCR) to the detection of Enterococcus spp. and Escherichia coli in water samples.", JOURNAL OF MICROBIOLOGICAL METHODS JAN 2003, vol. 52, no. 1, January 2003 (2003-01-01), pages 123 - 131, XP002459236, ISSN: 0167-7012 *
HE JIAN-WEN ET AL: "Quantification of enterococci and human adenoviruses in environmental samples by real-time PCR.", APPLIED AND ENVIRONMENTAL MICROBIOLOGY MAY 2005, vol. 71, no. 5, May 2005 (2005-05-01), pages 2250 - 2255, XP002459235, ISSN: 0099-2240 *
WAN YAN ET AL: "Validation of mixed-genome microarrays as a method for genetic discrimination.", APPLIED AND ENVIRONMENTAL MICROBIOLOGY MAR 2007, vol. 73, no. 5, March 2007 (2007-03-01), pages 1425 - 1432, ISSN: 0099-2240 *

Also Published As

Publication number Publication date
WO2007134208A2 (en) 2007-11-22
EP2021513B1 (en) 2011-06-29
JP2009536833A (en) 2009-10-22
AU2007249286B2 (en) 2013-06-13
AU2007249286A1 (en) 2007-11-22
ATE514794T1 (en) 2011-07-15
CA2651946A1 (en) 2007-11-22
EP2021513A2 (en) 2009-02-11
JP5154548B2 (en) 2013-02-27
US7588897B2 (en) 2009-09-15
US20070264658A1 (en) 2007-11-15

Similar Documents

Publication Publication Date Title
WO2007047912A3 (en) Compositions and methods to detect legionella pneumophila nucleic acid
WO2008054556A3 (en) Methods and compositions for detection of a target nucleic acid sequence
WO2010028382A3 (en) Collecting and processing complex macromolecular mixtures
WO2009085704A3 (en) Compositions and methods to detect candida albicans nucleic acid
WO2010129937A3 (en) Methods for detecting genetic variations in dna samples
ATE544869T1 (en) METHOD AND SUBSTANCES FOR ISOLATION AND DETECTION OF SMALL POLYNUCLEOTIDES
WO2009100215A3 (en) Detection of clostridium difficile
WO2006086673A3 (en) Nucleotide compositions and uses thereof
WO2009022125A8 (en) Identification of nucleic acid sequences
WO2010135705A3 (en) Biological bar code
HK1133295A1 (en) Use of protein s100a12 as a marker for colorectal cancer s100a12
WO2007116298A3 (en) Nucleic acid detection using lateral flow methods
WO2011153354A8 (en) Methods and kits for in situ detection of nucleotide sequences
WO2012056227A3 (en) Multiplex amplification and detection
EP2314680A4 (en) Method for amplification of target nucleic acid sequence, method for detection of mutation by using the method, and reagents for use in the methods
WO2009033163A3 (en) Borrelia diagnostics and screening methods
WO2010096202A3 (en) Sequence-specific detection of nucleotide sequences
EP2716770A3 (en) Nucleic acid probes for species-specific detection of infectious bacteria
WO2007134208A3 (en) Compositions and methods to detect enterococci nucleic acid
WO2009105592A3 (en) Compositions and methods for detection of propionibacterium acnes nucleic acid
WO2012021493A3 (en) Compositions and methods for quantifying a nucleic acid sequence in a sample
WO2006133385A3 (en) Compositions, methods and kits for determining the presence of chlamydophila pneumoniae in a test sample
WO2009153667A3 (en) Method for the detection of ovarian cancer
WO2012064978A3 (en) Compositions, methods, and kits for detecting and identifying mycobacteria
WO2012034130A3 (en) Methods and compositions for nucleic acid detection

Legal Events

Date Code Title Description
121 Ep: the epo has been informed by wipo that ep was designated in this application

Ref document number: 07783627

Country of ref document: EP

Kind code of ref document: A2

WWE Wipo information: entry into national phase

Ref document number: 2651946

Country of ref document: CA

WWE Wipo information: entry into national phase

Ref document number: 2009511178

Country of ref document: JP

NENP Non-entry into the national phase

Ref country code: DE

WWE Wipo information: entry into national phase

Ref document number: 2007783627

Country of ref document: EP

WWE Wipo information: entry into national phase

Ref document number: 2007249286

Country of ref document: AU

ENP Entry into the national phase

Ref document number: 2007249286

Country of ref document: AU

Date of ref document: 20070511

Kind code of ref document: A