United States Patent [19]
Kawasaki et al.
[11] Patent Number: 5,057,410 [45] Date of Patent: Oct. 15, 1991
[54] CHIMERIC MESSENGER RNA DETECTION METHODS
[75] Inventors: Ernest S. Kawasaki, Richmond;
Francis P. McCormick, Albany;
Owen O. Witto, Sherman Oaks, all of
Calif.
[73] Assignee: Cetus Corporation, Emeryville, Calif.
[21] Appl. No.: 229,604
[22] Filed: Aug. 5, 1988
[51] Int. C1.5 C12Q 1/68; C07H 15/12;
C12N 15/00
[52] U.S. CI 435/6; 536/27;
935/77; 935/78
[58] Field of Search 435/6; 536/27; 935/77,
935/78
[56] References Cited
U.S. PATENT DOCUMENTS
4.681,840 7/1987 Stephenson 435/6
4,683,195 7/1987 Mullis 435/6
4,683,202 7/1987 Mullis 435/91
FOREIGN PATENT DOCUMENTS 0181635 5/1986 European Pat. Off. .
OTHER PUBLICATIONS
Todd et al., Nature, V. 329 (10-15-87) pp. 599-604.
Harbarth et al., DNA, v. 4, n. 74 (1988) pp. 297-306.
Shtivelman et al., Cell, v. 47 (10-24-86) pp. 277-284.
Leder et al. (1983) Science 222:765-771.
Barletta et al. (1987) Science 235:1064-1067.
Preisler et al. (1987) Cancer Res. 47:847-880.
Pinto et al. (1987) Blood 70:1450-1457.
Heisterkamp et al. (1985) Nature 315:758-761.
Grosveld et al. (1986) Mol Cell 6(2):607-616.
Shtivelman et al. (1986) Cell 47:277-284.
Hermans et al. (1987) Cell 51:33-40.
Fainstein (1987) Nature 330:386-388.
Clark et al. (1988) Science 239:775-777.
Groffen et al. (1984) Cell 36:93-99.
Crescenzi et al. (1988) PNAS 85:4869-4873.
Lee et al. (1987) Science 237:175-178.
Powell et al. (1987) Cell 50:831-840.
Harbarth et al. (1988) DNA 7:297-306.
Todd et al. (1987) Nature 329:599-604.
Simpson et al. (1988) Biochem. Biophys. Res Comm.
151:487-492.
Lee et al. (1988) Science 239:1288-1291.
Byrne et al. (1988) Nucleic Acid Research 16:41.
Sarkar et al. (1988) Nucleic Acid Research 16:519.
Murakawa et al. (1988) DNA 7:287-295.
Lee et al. (1988) Blood 70:282a.
City of Hope (1988) Technology Licensing Opportunities p. 5.
Farr et al. (1988) PNAS 85:1629-1633.
Invitron (1988) The Digest 1:2.
Kawasaki et al. (1988) PNAS 85.
Primary Examiner—Robert A. Wax
Assistant Examiner—Mindy B. Fleisher
Attorney, Agent, or Firm—Stacey R. Sias; Richard M.
Snead; Kevin R. Kaster
[57] ABSTRACT
The invention provides highly sensitive methods for detecting specific sequences contained in chimeric mRNA. The mRNA sequences are reverse transcribed into complementary DNA (cDNA), amplified by the Polymerase Chain Reaction, and detected by hybridization with a labeled sequence specific oligonucleotide probe. The method is particularly valuable for the detection of chimeric mRNAs experessed by activated oncogenes that result from aberrant genetic rearragements such as chromosomal translocations.
24 Claims, 3 Drawing Sheets