Southern, "DNA fingerprinting by hybridization to oligonucleotide arrays," Electrophoresis 16(9):1539-1542 [1995].
Southern, "DNA chips: analyzing sequence by hybridization to oligonucleotides on a large scale," TIG 12(3): 1-6 [1996]. Strobel and Doudna, "RNA Seeing Double: Close-Packing of Helices in RNA Tertiary Structure," TIBS Reviews 22:262-266 [1997].
Suo and Johnson, "RNA Secondary Structure Switching During DNA Synthesis Catalyzed by HIV-1 Reverse Transcriptase," Biochemistry 36:14778-14785 [1997]. Walter et al., "Coaxial Stacking ol Helixes Enhances Binding of Oligoribonucleotides and Improves Predictions of RNA Folding," Proc. Natl. Acad. Sci USA 91:9218-9222 [1994].
Weiler et al., "Hybridization Based DNA Screening on Peptide Nucleic Acid (PNA) Oligomer Arrays," Nucl. Acids Res. 25(14):2792-2799 [1997].
Welch et al., "Structures of Bulged Three-Way DNA Junctions," Nucl. Acids Res. 21(19):4548^555 [1993]. Woese and Pace, "Probing RNA Structure, Function, and History by Comparative Analysis," Chapter 4 in The RNA World, Cold Spring Harbor Laboratory Press, New York, pp. 91-117 [1993].
Wyatt and Tinoco, "RNA Structural Elements and RNA Function," Chapter 18 in The RNA World, Cold Spring Harbor Laboratory Press, New York, pp. 465-496 [1993].
Ho et al., "Mapping of RNA accessible sites for antisense experiments with oligonucleotide libraries," Nature Biotech 16:59-63 [1998]).
Kirby et al., "Maintenance of pre-mRNA secondary structure by epistatic selection," Proc. Natl. Acad. Sci. USA 92:9047-9051 [1995].
Tabernero et al., "The Posttranscriptional Control Element of the Simian Retrovirus Type 1 Forms an Extensive RNA Secondary Structure Necessary for Its Function," /. Virol. 70:5998-6011 [1996].
Ladbury et al., "The Thermodynamics of Formation of a Three-Strand, DNA Three-Way Junction Complex," Biochemistry 33:6828-6833 [1994].
Leontis et al., "Stability and structure of three-way DNA junctions containing unpaired nucleotides," Nucl. Acids Res. 19:759-766 [1991].
Zhong et al., "Thermodynamics of dT—dT Base Pair Mismatching in Linear DNA Duplexes and Three-Arm DNa Junctions," Biochemistry 36:2485 2491 [1997].
Southern, "Detection of Specific Sequences Among DNA Fragments Separated by Gel Electrophoresis," /. Mol. Biol, 98:503-517 [1975].
* cited by examiner
