CAD, a multienzymatic protein at the head of de novo pyrimidine biosynthesis

F del Caño-Ochoa, M Moreno-Morcillo… - … Protein Complexes II …, 2019 - Springer
… DHO is a ubiquitous Zn metalloenzyme catalyzing the … of the pyrimidine ring– in the third
step of the de novo pyrimidine … molecule bridging Zn-α and Zn-β is displaced by the binding of …

De novo pyrimidine nucleotide synthesis

RL Switzer, CL Quinn - Bacillus subtilis and Other Gram …, 1993 - Wiley Online Library
… The pathway of biosynthesis of pyrimidine nucleoн tides de novo … twoto fivefold by anions
such as acetate, citrate, lactate, … is likely that two or three of these are involved in binding Zn 2 …

Pyrimidine nucleotide biosynthesis in animals: genes, enzymes, and regulation of UMP biosynthesis

ME Jones - Annual review of biochemistry, 1980 - annualreviews.org
… The second gene required for de novo biosynthesis of UMP … of either the essential histidine
or a hydrated zinc atom (89). The … Generally these forms are determined by the anions in the …

Pyrimidine biosynthesis in pathogens–structures and analysis of dihydroorotases from Yersinia pestis and Vibrio cholerae

J Lipowska, CD Miks, K Kwon, L Shuvalova… - International journal of …, 2019 - Elsevier
de novo pyrimidine biosynthesis pathway is conducted by DHO (EC 3.5.2.3) – a zinc
metalloenzyme … to affect substrate binding significantly; we assume that the substrate binding in …

Inhibitors of de novo nucleotide biosynthesis as drugs

RI Christopherson, SD Lyons… - Accounts of chemical …, 2002 - ACS Publications
… a zinc atom which is tightly boundzinc atom at the active site. Although design of this
phosphinothioic acid incorporated multiple structural attributes which individually promote binding

Structure, mechanism, and substrate profiles of the trinuclear metallophosphatases from the amidohydrolase superfamily

SV Ghodge, FM Raushel - Methods in Enzymology, 2018 - Elsevier
… phosphate mimic bound (PDB: 4GC3 ), products bound (PDB… formation of an alkoxide anion
intermediate that is initially … help inform efforts for de novo protein design and engineering of …

[PDF][PDF] The structure of adenylosuccinate lyase, an enzyme with dual activity in the de novo purine biosynthetic pathway

EA Toth, TO Yeates - Structure, 2000 - cell.com
… between proteins in this superfamily we superimposed the … the residues involved in substrate
binding and catalysis in ASL. … purified using a Q-sepharose anion-exchange column (40 ml …

Deciphering CAD: Structure and function of a mega‐enzymatic pyrimidine factory in health and disease

F del Caño‐Ochoa, S Ramón‐Maiques - Protein Science, 2021 - Wiley Online Library
… one of the initial reactions for de novo biosynthesis of pyrimidine nucleotides: glutaminase-…
of a rare histidine with negative charge (histidinate anion) (Figure 3f). This third Zn 2+ ion has …

[PDF][PDF] Structure, functional characterization, and evolution of the dihydroorotase domain of human CAD

A Grande-García, N Lallous, C Díaz-Tejada… - Structure, 2014 - cell.com
… controls the de novo biosynthesis of pyrimidines in animals, is … Furthermore, we found a
third Zn bound to a histidinate ion … in the rare form of a histidinate anion. Not surprisingly, given …

[PDF][PDF] The structure of SAICAR synthase: an enzyme in the de novo pathway of purine nucleotide biosynthesis

VM Levdikov, VV Barynin, AI Grebenko… - Structure, 1998 - cell.com
… Together these enzymes form a new superfamily of mononucleotide-binding domains. There
appears to be no other enzyme, however, which is composed of the same combination of …